Package index • ViroReportR

All functions

clean_sample_data(): Clean and validate case count data for EpiEstim
create_quantiles(): summarise a data frame d by groups along a variable
current_forecast_text(): Print out text output for ViroReportR report detailing current number of case visits, last value of Rt and corresponding intervals
fit_epiestim_model(): fit_epiestim_model - Function to estimate the reproduction number of an epidemic
forecast_metrics(): Extract current forecast metrics: forecast prediction, percentile interval and Rt value
generate_forecast(): Forecast daily epidemic cases using EpiEstim
generate_forecast_report(): Generate Viral Respiratory Forecast Report
generate_validation(): Validate forecast performance over multiple time windows
generate_validation_metric(): Compute Forecast Validation Metrics (SMAPE & MASE)
get_aggregated_data(): Extract Aggregated Weekly Generic Data
plot_rt(): Plot Mean Rt with time index (dates)
plot_validation(): Plot a ribbon plot with each time horizon predictions against true values for validation
project_epiestim_model(): Extract daily forecast samples
simulate_data(): Simulate Daily Virus Incidence Data